Glomeromycota (informally glomeromycetes) is one of eight currently recognized divisions within the kingdomFungi, with approximately 230 described species. Members of the Glomeromycota form arbuscular mycorrhizas (AMs) that have the roots or thalli (e.g. in bryophytes) of land plants. Not all species have been shown to form AMs, and one, Geosiphon pyriformis, is known not to do so. Instead, it forms an endocytobiotic association with Nostoccyanobacteria. The majority of evidence shows that the Glomeromycota are dependent on land plants (Nostoc in the case of Geosiphon) for carbon and energy, but there is recent circumstantial evidence that some species may be able to lead an independent existence. The arbuscular mycorrhizal species are terrestrial and widely distributed in soils worldwide where they form symbioses with the roots of the majority of plant species (>80%). They can also be found in wetlands, including salt-marshes, and associated with epiphytic plants.
The Glomeromycota have generally coenocytic (occasionally sparsely septate) mycelia and reproduce asexually through blastic development of the hyphal tip to produce spores (Glomerospores) with diameters of 80–500 μm. In some, complex spores form within a terminal saccule. Recently it was shown that Glomus species contain 51 genes encoding all the tools necessary for meiosis. Based on these and related findings, it was suggested that Glomus species may have a cryptic sexual cycle.
New colonization of AM fungi largely depends on the amount of inoculum present in the soil. Although pre-existing hyphae and infected root fragments have been shown to successfully colonize the roots of a host, germinating spores are considered to be the key players in new host establishment. Spores are commonly dispersed by fungal and plant burrowing herbivore partners, but some air dispersal capabilities are also known. Studies have shown that spore germination is specific to particular environmental conditions such as right amount of nutrients, temperature or host availability. It has also been observed that the rate of root system colonization is directly correlated to spore density in the soil. In addition, new data also suggests that AM fungi host plants also secrete chemical factors which attract and enhance the growth of developing spore hyphae towards the root system.
The necessary components for the colonization of Glomeromycota include, the host's fine root system, proper development of intracellular arbuscular structures, and a well-established external fungal mycelium. Colonization is accomplished by the interactions between germinating spore hyphae and the root hairs of the host or by development of appressoria between epidermal root cells. The process is regulated by specialized chemical signaling and by changes in gene expression of both the host and AM fungi. Intracellular hyphae extend up to the cortical cells of the root and penetrate the cell walls, but not the inner cellular membrane creating an internal invagination . The penetrating hyphae develop a highly branched structure called an arbuscule which have low functional periods before degradation and absorption by host's root cells. A fully developed arbuscular mycorrhizal structure facilitates the two-way movement of nutrients between the host and mutualistic fungal partner. The symbiotic association allows the host plant to respond better to environment stresses, and the non-photosynthetic fungi to obtain carbohydrates produced by photosynthesis.
Initial studies of the Glomeromycota were based on the morphology of soil-borne sporocarps (spore clusters) found in or near colonized plant roots. Distinguishing features such as wall morphologies, size, shape, color, hyphal attachment and reaction to staining compounds allowed a phylogeny to be constructed. Superficial similarities led to the initial placement of genus Glomus in the unrelated family Endogonaceae. Following broader reviews that cleared up the sporocarp confusion, the Glomeromycota were first proposed in the genera Acaulospora and Gigaspora before being accorded their own order with the three families Glomaceae (now Glomeraceae), Acaulosporaceae and Gigasporaceae.
With the advent of molecular techniques this classification has undergone major revision. An analysis of small subunit (SSU) rRNA sequences indicated that they share a common ancestor with the Dikarya. Nowadays it is accepted that Glomeromycota consists of 4 orders.
Several species which produce glomoid spores (i.e. spores similar to Glomus) in fact belong to other deeply divergent lineages and were placed in the orders, Paraglomerales and Archaeosporales. This new classification includes the Geosiphonaceae, which presently contains one fungus (Geosiphon pyriformis) that forms endosymbiotic associations with the cyanobacteriumNostoc punctiforme and produces spores typical to this division, in the Archaeosporales.
Work in this field is incomplete, and members of Glomus may be better suited to different genera or families.
The biochemical and genetic characterization of the Glomeromycota has been hindered by their biotrophic nature, which impedes laboratory culturing. This obstacle was eventually surpassed with the use of root cultures. The first mycorrhizal gene to be sequenced was the small-subunit ribosomal RNA (SSU rRNA). This gene is highly conserved and commonly used in phylogenetic studies so was isolated from spores of each taxonomic group before amplification through the polymerase chain reaction (PCR). A metatranscriptomic survey of the Sevilleta Arid Lands found that 5.4% of the fungal rRNA reads mapped to Glomeromycota. This result was inconsistent with previous PCR-based studies of community structure in the region; suggesting that previous PCR-based studies may have underestimated Glomeromycota abundance due to amplification biases.
- ^Cavalier-Smith, T. (1998). "A revised six-kingdom system of Life". Biol. Rev. Camb. Philos. Soc.73: 246. doi:10.1017/s0006323198005167. (as "Glomomycetes")
- ^ abcdeSchüßler, A.; et al. (December 2001). "A new fungal phylum, the Glomeromycota: phylogeny and evolution". Mycol. Res. 105 (12): 1413–1421. doi:10.1017/S0953756201005196.
- ^Hibbett, D.S.; et al. (March 2007). "A higher level phylogenetic classification of the Fungi". Mycol. Res. 111 (5): 509–547. doi:10.1016/j.mycres.2007.03.004. PMID 17572334.
- ^Neue Seite 1Archived 2012-05-29 at Archive.is
- ^New Page 1Archived 2012-08-05 at Archive.is
- ^Hempel, S.; Renker, C. & Buscot, F. (2007). "Differences in the species composition of arbuscular mycorrhizal fungi in spore, root and soil communities in a grassland ecosystem". Environmental Microbiology. 9 (8): 1930–1938. doi:10.1111/j.1462-2920.2007.01309.x. PMID 17635540.
- ^ abSimon, L.; Bousquet, J.; Levesque, C.; Lalonde, M. (1993). "Origin and diversification of endomycorrhizal fungi and coincidence with vascular land plants". Nature. 363 (6424): 67–69. Bibcode:1993Natur.363...67S. doi:10.1038/363067a0.
- ^ abHalary S, Malik SB, Lildhar L, Slamovits CH, Hijri M, Corradi N (2011). "Conserved meiotic machinery in Glomus spp., a putatively ancient asexual fungal lineage". Genome Biol Evol. 3: 950–8. doi:10.1093/gbe/evr089. PMC 3184777. PMID 21876220.
- ^Halary S, Daubois L, Terrat Y, Ellenberger S, Wöstemeyer J, Hijri M (2013). "Mating type gene homologues and putative sex pheromone-sensing pathway in arbuscular mycorrhizal fungi, a presumably asexual plant root symbiont". PLoS ONE. 8 (11): e80729. doi:10.1371/journal.pone.0080729. PMC 3834313. PMID 24260466.
- ^Sanders IR (November 2011). "Fungal sex: meiosis machinery in ancient symbiotic fungi". Curr. Biol. 21 (21): R896–7. doi:10.1016/j.cub.2011.09.021. PMID 22075432.
- ^ abZangaro, Waldemar, Leila Rostirola, Vergal Souza, Priscila Almeida Alves, Bochi Lescano, Ricardo Rondina, Luiz Nogueira, and Eduardo Carrenho. "Root Colonization and Spore Abundance of Arbuscular Mycorrhizal Fungi in Distinct Successional Stages from an Atlantic Rainforest Biome in Southern Brazil." Mycorrhiza 23.3 (2013): 221-33. Web.
- ^ abcSmith, Sally E., and Read, David J. Mycorrhizal Symbiosis. 3rd ed. Burlington: Elsevier Science, 2010. Web.
- ^Tulasne, L.R. & C. Tulasne (1844). "Fungi nonnulli hipogaei, novi v. minus cogniti auct". Giornale Botanico Italiano. 2: 55–63.
- ^Wright, S.F. Management of Arbuscular Mycorrhizal Fungi. 2005. In Roots and Soil Management: Interactions between roots and the soil. Ed. Zobel, R.W., Wright, S.F. USA: American Society of Agronomy. Pp 183–197.
- ^Thaxter, R. (1922). "A revision of the Endogonaceae". Proc. Am. Acad. Arts Sci. 57 (12): 291–341. doi:10.2307/20025921. JSTOR 20025921.
- ^J.W. Gerdemann; J.M. Trappe (1974). "The Endogonaceae in the Pacific Northwest". Mycologia Memoirs. 5: 1–76.
- ^J.B. Morton; G.L. Benny (1990). "Revised classification of arbuscular mycorrhizal fungi (Zygomycetes): a new order, Glomales, two new suborders, Glomineae and Gigasporineae, and two new families, Acaulosporaceae and Gigasporaceae, with an emendation of Glomaceae". Mycotaxon. 37: 471–491.
- ^Schüßler, A.; et al. (January 2001). "Analysis of partial Glomales SSU rRNA gene sequences: implications for primer design and phylogeny". Mycol. Res. 105 (1): 5–15. doi:10.1017/S0953756200003725.
- ^Redecker, D.; Schüßler, A.; Stockinger, H.; Stürmer, S. L.; Morton, J. B. & Walker, C. (2013). "An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)". Mycorrhiza. 23: 515–531. doi:10.1007/s00572-013-0486-y.
- ^Redeker, D. (2002). "Molecular identification and phylogeny of arbuscular mycorrhizal fungi". Plant and Soil. 244: 67–73. doi:10.1023/A:1020283832275.
- ^Schüßler, A. (2002). "Molecular phylogeny, taxonomy, and evolution of Geosiphon pyriformis and arbuscular mycorrhizal fungi". Plant and Soil. 224: 75–83. doi:10.1023/A:1020238728910.
- ^Walker, C. (1992). "Systematics and taxonomy of the arbuscular mycorrhizal fungi (Glomales) – a possible way forward". Agronomie. 12 (10): 887–897. doi:10.1051/agro:19921026.
- ^Simon, L.; Lalonde, M.; Bruns, T.D. (1992). "Specific Amplification of 18S Fungal Ribosomal Genes from Vesicular-Arbuscular Endomycorrhizal Fungi Colonizing Roots". American Society of Microbiology. 58: 291–295.
- ^D.W. Malloch; K.A. Pirozynski; P.H. Raven (1980). "Ecological and evolutionary significance of mycorrhizal symbioses in vascular plants (A Review)". Proc. Natl. Acad. Sci. USA. 77 (4): 2113–2118. Bibcode:1980PNAS...77.2113M. doi:10.1073/pnas.77.4.2113. PMC 348662. PMID 16592806.
- ^Hudson, Corey M.; Kirton, Edward; Hutchinson, Miriam I.; Redfern, Joanna L.; Simmons, Blake; Ackerman, Eric; Singh, Seema; Williams, Kelly P.; Natvig, Donald O.; Powell, Amy J. (December 2015). "Lignin-modifying processes in the rhizosphere of arid land grasses". Environmental Microbiology. 17 (12): 4965–4978. doi:10.1111/1462-2920.13020. PMID 26279186.
In this article we will discuss about the classification of fungi by various botanists.
Classification of Fungi by Bauhin (1623):
Bauhin (1623) is the first who described about 100 species of fungi in his book ‘Pinax Theatri Botanici’.
But the detailed classification of fungi was first proposed by Elias Fries in his book “Systema Mycologicum”, published in three volumes between 1821 and 1831, where he divided fungi in four classes:
(iii) Gastromycetes, and
Classification of Fungi by Saccardo:
Later, Saccardo (1884) in his book “Sylloge Fungorum” divided fungi into six classes:
(v) Basidio- mycetes and
Later, much more handy system of classification was proposed by Gwynne-Vaughan and Barnes (1926). In their classification, Myxomycetes were not considered as fungi and were included by them as forms resembling fungi.
The outlines of the classification proposed by them are:
Key to Classes of Fungi:
A. Mycelium usually aseptate … Phycomycetes Mycelium septate.
B. Sexual reproduction results in formation of asci containing ascospores … Ascomycetes.
C. Sexual reproduction results in formation of basidium bearing basidiospores…………………………………… Basidiomycetes.
D. Sexual reproduction not known (ascospores and Hsidiospores absent)…Deuteromycetes or Fungi imperfecti.
Key to Subclasses:
i. Mycelium absent or rudimentary. ………………………………………………..Archimycetes
(e.g., Synchytrium, Olpidium) Mycelium well-developed.
ii. Oospore produced after sexual union of dissimilar gametes ………………………………………………..Oomycetes
(e.g., Pythium, Phytophthora)
iii. Zygospore produced after sexual union of gametangia ………………………………………… Zygomycetes
(e.g., Rhizopus, Mucor)
Key to Subclasses:
i. Round ascocarp contains asci, arranged irregularly ……………………. Plectomycetes
(e.g., Penicillium, Erysiphae)
ii. Cup-shaped ascocarp contains asci, arranged in parallel series …………………………………………………. Discomycetes (e.g., Ascobolus, Peziza)
iii. Flask-shaped ascocarp contains asci, arranged in parallel series …………………………………………………… Pyrenomycetes
(e.g., Daldenia, Xylaria)
Key to Subclasses:
1. Number of basidiospores per basidium are indefinite………. Hemibasidiomycetes
(e.g., Tilletia, Ustilago)
Number of basidiospores per basidium are definite.
ii. Basidium septate …Protobasidiomycetes
(e.g., Puccinia, Gymnosporangium)
iii. Basidium aseptate…Autobasidiomycetes
(e.g., Agaricus, Polyporus)
Classification of Fungi by I. E. A. Gaumann and B. O. Dodge (1928):
E. A. Gaumann and B. O. Dodge (1928) also did not consider the Myxomycetes as fungi. They classified fungi based on both the phases (i.e., haploid and diploid) of life cycle; structure of thallus and organs of fructifications.
They divided the fungi into four classes are:
Thallus naked; diploid stage in the life cycle is represented only by the zygote.
Thallus with distinct cell wall; diploid stage in the life cycle is represented only by the zygote.
Thallus highly developed with distinct cell wall. Dikaryotic mycelium is formed by plasmogamy during sexual reproduction and meiosis takes place in special reproductive organ, the ascus. Ascospores are developed endogenously in the ascus, which remain naked or enclosed in fruit body.
Thallus as in Ascomycetes; Dikaryotic mycelium is formed by plasmogamy; the fruit body is known as basi- diocarp. The basidiospores develop exo- genously on the basidium on/inside the basidiocarp.
Classification of Fungi by E. A. Bessey (1950):
E. A. Bessey (1950) proposed a more elaborate system of classification of fungi, based on reproductive characteristics.
The outline of the classification is:
A. Lower fungi:
Fruit bodies are not formed.
Plants one-celled or with coenocytic mycelium. Sexual reproduction results the development of oospore or zygospore.
B. Higher fungi (Phylum. Carpomyceteae):
Fruit bodies are formed.
Fruit body contains asci, where ascospores are formed endogenously.
Fruit body contains basidia, where basidiospores are formed exogenously.
Sexual stage not known.
Classification of Fungi by G. W. Martin (1961):
G. W. Martin (1961) included slime moulds under fungi. His classification is based on septation of hypha and characteristics of spore.
The outline of the system is:
Plant body having naked protoplast.
Plant body may be unicellular or filamentous and are true walled fungi.
It is divided into four classes:
Mycelium septate and sexual spore i.e., ascospores develop endogenously.
Mycelium septate and sexual spore i.e., basidiospores develop exogenously.
Mycelium septate and sexual reproduction absent. Reproduction takes place only by asexual spores.
Classification of Fungi by C. J. Alexopoulos (1962):
C. J. Alexopoulos (1962) also included slime molds under fungi and placed them as Division Mycota and it was divided into two subdivisions: Myxomycotina (wall-less form) and Eumycotina (true, walled fungi).
The outline of his classification is:
Microscopic, unicellular or filamentous thallus with chitinous or cellulosic cell wall containing typical eukaryotic nucleus. Reproduction takes place both asexually and sexually.
A. Subdivision. Myxomycotina:
Plant body is Plasmodium.
1. Class. Myxomycetes:
Vegetative phase is plasmodium. Reproduction takes place by very small multinucleate spore.
B. Subdivision. Eumycotina:
Vegetative phase is either unicellular or branched mycelium with distinct cell wall. Hyphae are coenocytic (aseptate and multinucleate) or septate. Each cell may be uni-, bi- or multinucleate. Reproduction by asexual (spore) or sexual (gamete) means.
The sub-divisions has been .divided into eight natural classes and one form-class.
Motile cells with single whiplash flagellum placed posteriorly.
Motile cells with single tinsel flagellum placed anteriorly.
Vegetative phase consists of multinucleate and well-developed mycelium. Motile cells have two flagella i.e., biflagellate consists of one whiplash and the other tinsel type.
Multinucleate thallus without cell wall, remains parasitically inside the host cells. Motile cells are with two whiplash flagella of unequal in length.
Well-developed coenocytic (multinucleate and aseptate) mycelium grows either parasitically or saprophytically. Motile cells are absent.
Multinucleate simple or branched thallus; mostly parasite on arthopods.
Well-developed mycelium with septate hyphae. Ascospores are produced endogenously inside ascus.
Well-developed mycelium with septate hyphae. Basidiospores are produced exogenously on basidium.
1. Form-class. Deuteromycetes:
Well-developed mycelium with septate hyphae. Sexual phase unknown. Reproduces mainly by asexual means.
Classification of Fungi by V. C. J. Alexopoulos and C. W. Mims (1979):
Later, C. J. Alexopoulos and C. W. Mims (1979) placed fungi and slime molds under the kingdom of their own, called Myceteae under the superkingdom Eukaryonta. The kingdom is divided into three divisions and further the divisions are divided into sub-division, class and form-class.
The outline of the classification is given:
Kingdom. Myceteae (Fungi):
Achlorophyllous, saprobic or parasitic organisms with unicellular or more typically, filamentous soma (thallus), usually surrounded by cell walls that characteristically consists of chitin and other complex carbohydrates, nutrition absorptive, except in the slime molds (Division Gymno- mycota) where it is phagotrophic, propagation typically by means of spores produced by various types of sporophores; asexual and sexual reproduction usually present.
The kingdom is subdivided into three major divisions:
A. Division. Gymnomycota:
Phagotrophic organisms with somatic structures devoid of cell walls:
a. Subdivision. Acrasiogynomycotina:
1. Class. Acrasiomycetes
b. Subdivision. Plasmodiogymnomycotina:
1. Class. Protosteliomycetes
2. Class. Myxomycetes
B. Division. Mastigomycota:
Fungi with centrioles; flagellate cells typically produced during the life cycle; nutrition typically absorptive; varying from unicellular that becomes converted into a sporangium, to an extensive, filamentous, coenocytic mycelium, asexual reproduction typically by zoospores; sexual reproduction by various means:
a. Subdivision. Haplomastigomycotina
1. Class. Chytridiomycetes
2. Class. Hyphochytridiomycetes
3. Class. Plasmodiophoromycetes
b. Subdivision. Diplomastigomycotina
1. Class. Oomycetes
C. Division. Amastigomycota:
Fungi without centriole, no motile cells, nutrition absorptive, single-celled to mycelial with a limited or extensive, septate or aseptate mycelium, asexual reproduction by budding, fragmentation, sporangiospores or conidia; sexual reproduction, where known, by various means; haplobiontic-haploid life cycle with zygotic meiosis.
a. Subdivision. Zygomycotina
1. Class. Zygomycetes
2. Class. Trichomycetes
b. Subdivision. Ascomycotina
1. Class. Ascomycetes
c. Subdivision. Basidiomycotina
1. Class. Basidiomycetes
d. Subdivision. Deuteromycotina
1. Form class. Deuteromycetes.
Classification of Fungi by Ainsworth G. C. (1966, 71, 73):
Ainsworth G. C. (1966, 71, 73) proposed a more natural system of classification of fungi. This classification is based on morphology, especially of reproductive structure. He includes fungi along with slime molds under the kingdom Mycota.
Based on the presence or absence of Plasmodium and pseudoplasmodium; the kingdom Mycota is further divided into two divisions:
Myxomycota i.e., slime molds and Eumycota or true fungi. Divisions are subsequently divided into subdivision, class, subclass, order, family and then to genus. According to his classification, division ends in mycota, subdivision in mycotina, class in mycetes, subclass in mycetidae order in ales and family in aceae.
A schematic outline of Ainsworth’s (1973) classification is given:
i. Free-living, parasitic or mutualistic symbionts, devoid of chlorophyll.
ii. Cell wall composition is very variable, majority contain chitin and glucan.
iii. Reserve food materials are oil, mannitol and glycogen.
iv. Except some unicellular members, majority are filamentous.
A. Division. Myxomycota:
Wall-less organisms possess either a Plasmodium (a mass of naked multinucleate protoplasm having amoeboid movement) or a pseudoplasmodium (an aggregation of separate amoeboid cells). Both are of slimy consistency, hence slime molds.
1. Class. Acrasiomycetes (cellular slime molds)
2. Class. Hydromyxomycetes (net slime molds)
3. Class. Myxomycetes (true slime molds)
4. Class. Plasmodiophoromycetes (endo- parasitic slime molds).
B. Division Eumycota (True fungi, all with walls):
a. Subdivision Mastigomycotina (motile cells – zoospores present, perfect state spore-oospore).
1. Class. Chitridiomycetes (unicellular, zoospore with single whiplash flagellum).
2. Class. Hyphochytridiomycetes (unicellular, zoospore with single tinsel flagellum).
3. Class. Oomycetes (aseptate mycelium, zoospores with two flagella).
b. Subdivision. Zygomycotina (mycelium aseptate, perfect state spore-zygospore).
1. Class. Zygomycetes (mycelium immersed in the host tissue).
2. Class. Trichomycetes (mycelium not immersed in the host tissue).
c. Subdivision. Ascomycotina (yeasts or septate mycelium, perfect state spore- ascospores formed in ascus, usually within ascocarp).
1. Class. Hemiascomycetes (no ascocarp, asci naked).
2. Class. Loculoascomycetes (fruit body an ascostroma, asci bitunicate i.e., 2-walled).
3. Class. Plectomycetes (fruit body cleistothecium, asci unitunicate i.e., 1-walled).
4. Class. Laboulbeniomycetes (fruit body perithecium, asci unitunicate, exoparasite of arthopods).
5. Class. Pyrenomycetes (fruit body perithecium, asci unitunicate, not parasitic on arthopods.
6. Class. Discomycetes (fruit body apothecium, asci unitunicate).
d. Subdivision. Basidiomycotina (yeast or septate mycelium, perfect state spore – basidiospore formed on a basidium).
1. Class. Teliomycetes. Basidiocarp lacking, teliospores grouped in sori or scattered within the host tissue, parasitic on vascular plant.
2. Class. Hymenomycetes. Basidio- carp present. Hymenium is completely or partly exposed at maturity. Basidiospore ballistospores.
3. Class. Casteromycetes. Basidiocarp present. Hymenium enclosed in basidiocarp. Basidiospore not ballistospores.
(e) Subdivision. Deuteromycotina or Fungi imperfecti. Yeast or septate mycelium. Perfect state unknown.
1. Class. Blastomycetes. Budding (Yeast or Yeast like) cells with or without pseudomycelium. True mycelium lacking or not well-developed.
2. Class. Hyphomycetes. Mycelia sterile or bearing asexual spore directly or on conidiophore, in various aggregation.
3. Class. Coelomycetes. Mycelial; asexual spore formed in pycnidium or acervulus.
Schematic representation of the outline with figure, the classification of G.C. Ainsworth (1973) is given:
Schematic outline of the classification of G. C. Ainsworth (1973):
The classification of Ainsworth (1973) has been followed in this book. Later, Webster (1980), Deacon (1980) and Hudson (1986) also proposed their classifications. Among all the above classifications, Ainsworth’s classification has been accepted by many mycologists, with some comments.
Say for example, the Mastigo- mycotina is a composite grouping covering all fungi that form motile flagellated zoospores. Among others, unrelated classes like Chitridio- mycetes and Oomycetes were included in the same group. Oomycetes has indeed quite a different evolutionary origin to that of most other fungi.
Classification of Fungi by Hawksworth et al. (1983 and 1995):
Ten years after the classification of Ainsworth (1973), Hawksworth et al. (1983) revised Ainsworth’s classification in the 7th edition of the “Dictionary of the Fungi”.
The changes made by them are:
1. The Division Myxomycota divided into eight classes instead of four classes.
2. The Sub-division Ascomycotina is directly divided into thirty seven (37) orders and arranged alphabetically; there is no classes in-between.
3. The subdivision Basidiomycotina is divided into four classes instead of three, where class Teliomycetes is replaced by Uredinio- mycetes and Ustilaginomycetes.
4. In the sub-division Deuteromycotina, the class Blastomycetes was not considered.
Later, Hawksworth et al. (1995) thoroughly revised the classification in the 8th edition of the “Dictionary of the Fungi”. The classification was based on the sequence of 18s rRNA among the different members.
Though members of fungi show similarity in their morphology, mode of nutrition and ecology, but the higher dissimilarity is observed in the base sequences of their 18s rRNA (or more precisely in the DNA coding for it), which is now considered as the most important parameter to determine the genetic relationship. Thus, it shows that the fungi are polyphyletic aggregation of unrelated members.
Based on the above fact and phylogenetic consideration, the entire fungal community are now segregated out and placed them under three different Kingdoms Fungi, Straminopila (Chromista) and Protozoa.
Based on comparison of several factors such as, 18s rRNA, cytoskele- ton protein, chemical features like chitin, mitochondrial codon UGA coding for tryptophan instead of termination, storage of glycogen, elongation factors and morphological structure of motile cells like male gamete in animal and zoospores in fungi, there is close similarity of fungi with animals than to other two groups like Straminopila and Protozoa.
The different taxa considered in this system are:
Further the species are divided into varieties, biological strains, physiological races, etc.
The different taxa considered in this system along with their ‘ending’ are:
Phylum — mycota
Sub-phylum — mycotina
Class — mycetes
Sub-class — mycetidae
Order — ales
Family — aceae
But the genera and species have no standard ending. In this system, division has been replaced by phylum and all taxa are written in italics.
All the three groups are placed under the Domain Eukaryota. Out of three kingdoms, kingdom Fungi includes only fungi, but the other two kingdoms include non-fungal phyla also.
The earlier consideration of the sub-division Deuteromycotina representing the asexual stages of Ascomycotina and Basidiomycotina (Ainsworth 1973, Hawksworth et al1983) was now reconsidered as a formal taxon as they are not a monophyletic group. The members are described under Mitosporic fungi.
1. Vegetative body is unicellular or commonly well developed, branched septate mycelium with uni- or multinucleate cells having perforated septa.
2. Mostly, the cell wall is composed of chitin and glucans, but in unicellular form, it is composed of glucans and mannans.
3. Vegetative reproduction takes place by fragmentation (in filamentous form), fission and budding (in unicellular form).
4. Asexual reproduction takes place by non-motile spores, such as conidia, oidia and chlamydospores.
5. Sexual reproduction takes place by gametangial copulation (Saccharomyces), gametangial contact (Penicillium), somatogamy (Morchella) or spermatiza- tion (Polystigma).
6. Complete absence of motile structures.
7. The product of sexual reproduction is the ascospores grown inside a small specialised sac-like structure, called ascus.
8. The fruit bodies (inside which ascus developed) are the ascocarps. The asco- carps may be cleistothecium (Penicilliumi), apothecium (Ascobolus), perithecium (Daldenia) or ascostroma (Elsinoe veneta).
Saccharomyces, Penicillium, Daldenia, Ascobolus, Morchella etc.
1. Presence of well-developed, branched and septate mycelium having simple (e.g., Ustlaginales and Uredinales) or dolipore (e.g., Auriculariaceae, aphyllo- phorales and Agaricales) septum (Fig. 4.2B & 4.2D).
2. The mycelial cells contain one nucleus, called monokaryotic i.e., primary mycelium or two nuclei, called dikaryotic i.e., secondary mycelium. The secondary mycelia may organise and form fruit body, called tertiary mycelium.
3. The cell wall is mainly composed of chitin and glucans.
(a) Vegetative reproduction takes place by budding and fragmentation.
(b) Asexual reproduction takes place by conidia, oidia or chlamydospores. This is lacking in some higher taxa of this subdivision.
(c) Sex organs are absent. During sexual reproduction, the dikaryotic cell is formed by somatogamy, sperma- tisation or by buller phenomenon. The dikaryotic phase persists for long period of time. Karyogamy occurs in basidium mother cell and forms diploid nucleus, which is ephemeral (short lived). 4-haploid basidiospores are formed by meio- sis. Basidiospores are developed exogenously on the horn-shaped structure, the sterigmata (generally 4) on the basidium.
5. Basidia are of two types: Holobasidium (aseptate) e.g., Agaricus, Polyporus etc. (Fig. 4.56A) and Phragmobasidium (septate) e.g., Puccinia, Ustilago (Fig.4.56B) etc.
6. Except in lower forms (Puccinia, Ustilago), secondary mycelia by aggregation form fruit body, the basidiocarp [Agaricus, Polyporus etc.). The number of spores’ on each basidium is commonly 4, but 2 or more than 4 are also present.
Agaricus, Polyporus, Puccinia etc.
Class Basidiomycetes Class Teliomycetes Class Ustomycetes
1. Vegetative body is coenocytic and thalloid, either globose or ovoid structure, either an elongated simple hypha, or well, developed mycelium.
2. Cell wall is mainly made up of chitin and glucan.
3. Nuclear division is intranuclear and centric type.
4. Members of this group produce motile cells at some stage of their life cycle.
5. Motile cells (zoospores and gametes) possess single posteriorly placed, whiplash type of flagellum except a few polyflagellate cells.
6. Sexual reproduction takes place by planogametes developed in gametangia. The fused gametes form zygote. Zygote on germination develops either into a resting spore or resting sporangium except’ a few those develop diploid thallus.
Synchytrium, Monoble- pharis, Rhizophidium etc.
1. The thallus is normally haploid, consisting of coenocytic mycelium and its wall contains chitin and chitosan.
2. The mycelium contains cell organelles like other fungi, except typical golgi bodies and centriole.
3. Asexual reproduction takes place by aplanospores.
4. Sexual reproduction takes place by gametangial copulation results in the formation of zygospore.
Mucor, Rhizopus, Phyco- myces, Cunninghamella etc.
Kingdom Straminopila or Chromista (i.e., pseudo- fungi).
It is a very small group, comprising of about 23 known species.
1. The organisms are thalloid, soil-inhabiting or aquatic, chitrid-like.
2. Cell wall contains both chitin and cellulose.
3. Thalli are either holocarpic or eucarpic. The holocarpic thalli are endobiotic and converted into a zoosporangium. In eucarpic forms, the thalli may consist of a single reproductive organ bearing a branched rhizoidal system or may be polycentric with septate and branched hyphae.
4. Motile cells (zoospores) possess single anteriorly placed flagellum, converted with flagellar hairs, which developed inside zoosporangium and are released through discharge tubes.
5. Sexual reproduction has not been demonstrated conclusively in any member. But some evidence suggestive of sexual cycle has been described for Anisolpidium ectocarpi parasitises on Ectocarpus mitchelIae. Suspected zygote has been reported in some, but meiosis has not been reported.
Rhizidiomyces, Reessia, Hyphochytrium etc.
(Net Slime Molds)
1. Members are found primarily in estuarine (a wide tidal mouth of a river) and near shore habitat; associated with algae, leaves of higher plants and organic debris.
2. Members are mostly saprobic or weak parasites and exhibit nutrition through absorption.
3. Vegetative body is a net slime mold.
4. Presence of an ectoplasmic net-work of anastomosing, branched, wall-less filaments, produced by cells with a specialized cell surface organelle, the sagenogen or bothrosome.
5. Cell walls are composed of scales derived from Golgi.
6. Zoospores are flagellate, heterokont (unequal flagella) type. Flagella are laterally inserted. Larger one is tinsel, directed anteriorly and the shorter one is whiplash, directed posteriorly.
Labyrinthula, Thrausto- chytrium etc.
1. Members of Oomycetes are found to grow in both fresh water and salt water as well as in terrestrial habitat.
2. They are either unicellular or filamentous, composed of profusely branched and coenocytic hyphae.
3. Septa develop in older region and also at the base of reproductive structures.
4. Cell wall is composed primarily of β- glucans, but also contains hydroxylpro- line, an amino acid; and small amount of cellulose.
5. Cells contain mitochondria with tubular cristae and with various types of biochemical and molecular characteristics.
6. Cell divisions (both mitotic and meiotic) are intranuclear and centric (i.e., the nuclear envelop remains intact until the end of division and centrioles are present at the poles of the dividing nuclei).
7. Unicellular forms are holocarpic, but filamentous forms are eucarpic.
8. Asexual reproduction takes place by means of biflagellate zoospores with shorter whiplash and longer tinsel flagella.
9. Zoospore ultrastructure shows various characteristics.
10. Sexual reproduction is oogamous and takes place by gametangial contact and which produces thick-walled sexual spore, the oospore.
11. Meiosis takes place in the developing gametangia (antheridia and oogonia).
Pythium, Peronospora, Albugo etc.
Kingdom Protozoa (i.e., the slime moulds).
(Endoparasitic Slime Molds)
This group is commonly known as endoparasitic slime molds. They are obligate parasites grow on algae, aquatic fungi and higher plants (commonly in the roots).
1. Members of this class are obligate parasites (i.e., biotrophic) on fresh water algae, aquatic fungi and higher plants (commonly in the roots).
2. Vegetative body consists of a naked holocarpic plasmodium.
3. Plasmodia are of two types in their life cycle:
Sporangiogenous plasmodium (forms sporangium) and cytogenous- plasmodium (gives rise to cyst i.e., resting spore).
4. Zoospores biflagellate, having equal flagella of whiplash type situated in opposite direction, the shorter one in anterior and longer one in posterior side.
Plasmodiophora, Octo- myxa, Sorodiscus etc.
(Dictyostelid Cellular Slime Molds)
1. These are saprobic slime molds, grow in the middle of organic debris like dung, decaying plants and also in soil.
2. Somatic phase is microscopic and the fructifications are minute, inconspicuous (not easily noticed) and ephemeral (short-lived).
3. The somatic amoebae have filose pseudopodia and a nuclear envelope persisting up to later stage.
4. Somatic amoebae aggregate together to form a pseudoplasmodium.
5. The amoebae never fuse together, but retain their individuality with full cooperation as member of an association till the formation of sorocarp (Gr. sorus, heap; karpos, fruit).
6. The sorocarp is differentiated into two regions: stalk and spores. On germination, spores develop into myxamoeba.
Dictyostelium, Polysphon- dylium etc.
(Acrasid Cellular Slime Molds)
Members of this group are commonly known as Acrasid Cellular Slime Molds. They are found profusely in the upper layer of humus in deciduous forests and in cultivated lands.
1. Somatic phase mainly consists of amoeboid cells or myxamoebae.
2. Myxamoebae aggregate to form a pseudoplasmodium, which develops fruit body.
3. Lack of flagellated cells except in Pocheina rosea.
4. Fruit bodies may be sorocarp (in Dictyostelium) or sporocarp (in Protostelium).
Dictyostelium, Protostelium etc.
They are commonly known as true slime molds or plasmodial slime molds, found in damp places especially on old wood and other decomposing plant parts.
1. Somatic body is a free-living plasmodium.
2. They feed on yeast cells, protozoa, fungal spores and other substances.
3. Reproduction takes place by asexual and sexual means.
Asexual reproduction takes place by fragmentation in plasmodium or by binary fission in myxamoebae.
Sexual reproduction takes place by fusion between flagellated zoospores or myxamoeba to form zygote, from which multinucleate plasmodium develops by mitotic divisions. They develop different types of fructification. These are sporangium, aethalium and plas- modiocarp (Fig.4.11 D-G). Meiosis takes place during spore formation in the fructification.
Ceratiomyxa, Physarum etc.